Kraken will be decommissioned on April 30, 2014. For more information see Kraken Decommission FAQs
Kraken will be decommissioned on April 30, 2014. For more information see Kraken Decommission FAQs
The National Institute for Computational Sciences

Nautilus Software

VMD

Category: Analysis-Visualization

Description

VMD is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer.

Use

 module load vmd
 vmd

Support

This package has the following support level : Supported

Available Versions

Version Available Builds
intel pgi gnu Other
1.9
?
1.8.6
v