Kraken will be decommissioned on April 30, 2014. For more information see Kraken Decommission FAQs
Kraken will be decommissioned on April 30, 2014. For more information see Kraken Decommission FAQs
The National Institute for Computational Sciences

Nautilus Software

RAxML

Category: Analysis-Phylogenetics

Description

RAxML is a phylogenetics code that uses the Maximum likelihood model of molecular evolution. Similar to MrBayes code, it computes a likelihood score that depends upon tree topology, branch lengths and parameters for model.

Use

To use RAxML, simply load the module:

module load raxml
There are 4 different binaries to choose from:
  • raxmlHPC - serial
  • raxmlHPC-SSE3 - serial version that exploits fine-grain parallelism in processor
  • raxmlHPC-PTHREADS - parallel version
  • raxmlHPC-SSE3-PTHREADS - parallel with vector instructions
When using the parallel versions, specify the number of threads with the -T option.

More Info

See here for a short tutorial. For more information about RAxML see the Exelixis Lab site.

Support

This package has the following support level : Supported

Available Versions

Version Available Builds
intel pgi gnu Other
7.2.6
v