Kraken will be decommissioned on April 30, 2014. For more information see Kraken Decommission FAQs
Kraken will be decommissioned on April 30, 2014. For more information see Kraken Decommission FAQs
The National Institute for Computational Sciences

Nautilus Software

AutoParts

Category: Analysis-Phylogenetics

Description

AutoParts is a program that implements Bayesian estimation of phylogeny from partitioned nucleotide sequence data using Markov chain Monte Carlo methods under a Dirichlet process prior model. The evolutionary process may vary across an alignment of nucleotide sequences; for example, between different gene/genome regions, stem vs. loop regions of ribosomal DNA, etc. Conventionally, a series of fixed data-partition schemes are iteratively evaluated by a series of independent analyses to find the 'mixed-model' that adequately captures variation in the evolutionary process. By contrast, AutoParts automates the analysis of partitioned data by treating the data partitioning scheme as a random variable. Under this approach, the prior probabilities for the number of data partitions and the assignment of nucleotide sites to those data partitions are specified by a Dirichlet process prior model, such that the estimate of phylogeny is evaluated by integrating over all possible data partition schemes in the course of a single analysis.

Use

To use Autoparts, load the module:

module load autoparts

Support

This package has the following support level : Supported

Available Versions

Version Available Builds
intel pgi gnu Other
1.0
v